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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11437955 chr6:46928522 T/TC 1.92E-5 401 15.13 16.1 12.5 KM Plot
LGG rs114540401 chr3:153694341 C/G 0 401 14.93 17.07 0.23 KM Plot
LGG rs114674824 chr19:23551980 C/T 2.98E-6 406 15.3 15.67 7.8 KM Plot
LGG rs11470320 chr20:61487680 AAAG/A 3.24E-6 390 15.73 15.37 5.5 KM Plot
LGG rs114817256 chr19:23535924 A/G 2.59E-6 405 15.3 15.63 7.8 KM Plot
LGG rs11484773 chr1:169636242 C/T 2.95E-11 401 15.17 18.03 5.93 KM Plot
LGG rs11484817 chr1:169633825 C/G 2.95E-11 401 15.17 18.03 5.93 KM Plot
LGG rs114852534 chr7:64935273 A/G 9.18E-8 400 15.57 15.2 2.27 KM Plot
LGG rs114882152 chr4:84427735 C/G 2.11E-15 391 14.85 17.9 5.17 KM Plot
LGG rs11498722 chr10:97612401 C/T 0.000169 404 15.05 16.27 17.88 KM Plot
LGG rs115009652 chr4:84435986 C/T 1.22E-15 396 14.92 18.07 5.17 KM Plot
LGG rs115176224 chr10:43402209 G/C 6.92E-6 404 15.7 12.12 17.07 KM Plot
LGG rs115510684 chr2:228094233 G/A 0 403 15.7 13.23 0.62 KM Plot
LGG rs115672382 chr5:155948893 G/A 5.17E-6 403 15.6 15.23 15.37 KM Plot
LGG rs11586479 chr1:161698812 G/A 1.01E-5 399 14.83 19.03 13.97 KM Plot